The article is long and fairly technical, but to boil it down the GHCN made "adjustments" to "homogenize" the raw data taken from various weather stations. This was done supposedly to remove bad readings from things like moving thermometer stations around and the like. The basic algorithm is to average the 5 closest stations and then look to see if the readings from the station in question vary drastically from the average.
http://fascistsoup.com/2009/12/10/more-climate-fraud-uncovered/
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